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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
103
ATAC-seq
93
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
single cell RNA-seq
Assay category
105
DNA accessibility
94
Transcription
Date released
270
August, 2021
205
February, 2023
176
May, 2022
143
February, 2021
129
August, 2017
122
May, 2021
64
October, 2019
59
September, 2020
58
May, 2020
48
March, 2020
47
September, 2023
26
July, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
May, 2023
14
November, 2017
10
November, 2020
8
January, 2018
8
October, 2017
7
August, 2020
5
December, 2019
5
March, 2023
4
July, 2018
4
March, 2019
4
October, 2022
2
November, 2019
1
April, 2019
1
August, 2018
1
August, 2022
1
December, 2018
1
November, 2018
1
September, 2018
Available data
76
fastq
65
bed narrowPeak
16
tsv
10
bed bed3
7
txt
4
bed bed3+
3
bed bedgraph
3
bigWig
Organism
204
Homo sapiens
Biosample type
95
tissue
88
primary cell
16
in vitro differentiated cells
6
cell line
Organ
56
pancreas
52
epithelium
36
heart
35
artery
35
blood vessel
35
vasculature
31
eye
14
connective tissue
8
bone element
8
skeleton
1
adipose tissue
1
brain
Project
106
AMP
76
HPAP
23
T1D
Genome assembly (visualization)
45
hg19
35
GRCh38
Lab
103
AMP-T2D consortium
76
Klaus Kaestner, Upenn
23
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
11
inconsistent ontology term
files.file_type!
tar
bam
BIOSAMPLE
ASSAY
205 results
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Clear Filters
ATAC-seq
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
single cell RNA-seq
tissue
coronary artery
35
islet of Langerhans
11
5
2
retina
15
2
pigmented layer of retina
12
2
acetabular part of hip bone
1
1
+ See 6 more…
primary cell
exocrine cell
39
pancreatic alpha cell
27
pancreatic beta cell
10
gabaergic neuron
3
glutamatergic neuron
3
+ See 2 more…
in vitro differentiated cells
chondrocyte
5
immature adipocyte
2
2
adipocyte
1
1
preadipocyte
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
+ See 2 more…
cell line
EndoC_BH1
3
2
1
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