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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
68
ChIP-seq
12
ATAC-seq
4
GRO-seq
Assay category
127
Transcription
68
DNA binding
12
DNA accessibility
Target of assay
53
histone
53
histone modification
28
narrow histone mark
25
broad histone mark
15
transcription factor
2
RNA binding protein
1
chromatin remodeller
Date released
89
May, 2021
August, 2017
34
December, 2017
31
February, 2018
22
August, 2021
22
February, 2021
4
January, 2018
4
October, 2019
3
February, 2023
2
March, 2020
Available data
237
bam
211
bigWig
131
tsv
89
bed narrowPeak
87
fastq
26
tagAlign
18
bed bed3+
16
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
Organism
211
Homo sapiens
Biosample type
1594
tissue
566
primary cell
519
cell line
211
in vitro differentiated cells
3
stem cell
Organ
21
embryo
20
epithelium
14
liver
9
connective tissue
2
pancreas
1
heart
Project
211
AMP
Genome assembly (visualization)
206
hg19
195
GRCh38
4
hg18
Lab
201
AMP-T2D consortium
5
Kyle Gaulton, UCSD
5
Struan F.A. Grant, CHOP
Audit category:
93
inconsistent ontology term
Audit category:
11
inconsistent control read length
files.file_type!
tar
month_released!
August, 2017
BIOSAMPLE
ASSAY
211 results
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total RNA-seq
ChIP-seq
ATAC-seq
GRO-seq
in vitro differentiated cells
cardiomyocytes
59
3
neural progenitor cell
7
13
cardiac precursors (cardiac muscle cell)
19
pancreatic endoderm
4
12
1
hepatocyte
14
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