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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
ChIP-seq
4
FAIRE-seq
3
ATAC-seq
2
DNase-seq
Assay category
31
DNA binding
9
DNA accessibility
Target of assay
30
transcription factor
4
RNA binding protein
2
chromatin remodeller
1
histone
1
histone modification
1
narrow histone mark
Date released
29
November, 2017
4
August, 2017
3
October, 2019
2
July, 2019
1
May, 2019
1
November, 2018
Available data
433
bam
407
fastq
239
bigWig
200
tsv
185
bed narrowPeak
161
txt
153
zippedFastqFolder
152
tagAlign
44
bigBed narrowPeak
40
bed broadPeak
23
bedpe bed3+
22
hic
19
bed bedMethyl
19
bigBed bedMethyl
18
bigBed broadPeak
15
bed bed3+
10
bed bed3
8
csv
7
bed bedgraph
4
hdf5
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
40
Homo sapiens
Biosample type
29
cell line
6
tissue
3
primary cell
2
in vitro differentiated cells
Organ
29
liver
3
connective tissue
2
pancreas
1
adipose tissue
1
brain
1
kidney
1
limb
1
musculature of body
Project
40
AMP
Genome assembly (visualization)
GRCh38
959
hg19
Lab
40
AMP-T2D consortium
Audit category:
7
missing controlled_by
Audit category:
2
inconsistent control read length
2
inconsistent control run_type
files.file_type!
tar
lab.title!
Stephen Parker, UMich
assembly!
GRCh38
BIOSAMPLE
ASSAY
40 results
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ChIP-seq
FAIRE-seq
ATAC-seq
DNase-seq
cell line
HepG2
29
tissue
adipose tissue
1
frontal cortex
1
islet of Langerhans
1
kidney
1
muscle of leg
1
+ See 1 more…
primary cell
skeletal muscle myoblast
1
2
in vitro differentiated cells
adipocyte
2
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