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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
ChIP-seq
Assay category
85
DNA binding
Target of assay
417
transcription factor
389
histone
389
histone modification
198
broad histone mark
190
narrow histone mark
156
control
89
recombinant protein
85
RNA binding protein
34
chromatin remodeller
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
36
November, 2017
21
November, 2018
6
August, 2017
6
January, 2019
5
May, 2021
4
June, 2019
2
December, 2017
2
December, 2018
1
August, 2021
1
May, 2019
1
November, 2019
Available data
80
bam
79
bed narrowPeak
79
bigWig
74
fastq
73
bigBed narrowPeak
9
bed broadPeak
9
bigBed broadPeak
tar
Organism
85
Homo sapiens
Biosample type
64
cell line
tissue
11
in vitro differentiated cells
10
primary cell
Organ
55
liver
10
blood
10
bodily fluid
8
epithelium
5
connective tissue
3
brain
2
kidney
2
vasculature
1
blood vessel
1
eye
1
heart
1
pancreas
Project
85
AMP
Genome assembly (visualization)
77
hg19
73
GRCh38
Lab
79
AMP-T2D consortium
5
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
files.file_type!
tar
lab.title!
Stephen Parker, UMich
biosample_type!
tissue
BIOSAMPLE
ASSAY
85 results
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Clear Filters
ChIP-seq
cell line
HepG2
53
GM12878
10
EndoC_BH1
1
in vitro differentiated cells
embryonic stem cell
5
adipocyte
4
hepatocyte
2
primary cell
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
cardiac fibroblast
1
cardiac muscle cell
1
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