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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
229
ChIP-seq
Assay category
229
DNA binding
Target of assay
163
histone
163
histone modification
105
narrow histone mark
58
broad histone mark
57
control
9
transcription factor
Date released
August, 2017
78
November, 2017
50
May, 2020
49
October, 2019
24
August, 2021
14
October, 2017
8
February, 2021
6
May, 2021
Available data
2906
bam
2677
bigWig
1543
bed narrowPeak
1415
tsv
1047
fastq
1000
bigBed narrowPeak
281
bed broadPeak
270
bigBed broadPeak
238
bed bed3+
229
tagAlign
155
txt
153
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
229
Homo sapiens
Biosample type
179
tissue
26
in vitro differentiated cells
20
cell line
4
primary cell
Organ
118
brain
66
liver
7
epithelium
6
artery
6
blood vessel
6
heart
6
vasculature
3
pancreas
1
pituitary gland
Project
229
AMP
Genome assembly (visualization)
145
GRCh38
116
hg19
Lab
229
AMP-T2D consortium
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
11
inconsistent control read length
files.file_type!
tar
month_released!
August, 2017
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
229 results
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Clear Filters
ChIP-seq
tissue
liver
50
substantia nigra
16
caudate nucleus
15
layer of hippocampus
15
brain
14
+ See 39 more…
in vitro differentiated cells
neural progenitor cell
20
cardiomyocytes
3
pancreatic PP cell
3
cell line
HepG2
12
smooth muscle cell of the coronary artery
6
iPSC derived cell line
2
primary cell
hepatocyte
4
See all biosamples
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