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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
260
total RNA-seq
212
ChIP-seq
119
single cell RNA-seq
111
ATAC-seq
61
snATAC-seq
17
pCHi-C
10
MeRIP-seq
8
Hi-C
6
WGBS
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
111
DNA accessibility
Date released
May, 2022
66
August, 2021
14
February, 2023
11
May, 2023
7
August, 2020
5
May, 2021
4
March, 2019
3
September, 2020
1
October, 2017
Available data
68
bed narrowPeak
64
xls
21
bigWig
12
fastq
3
bed bedgraph
3
txt
2
bed broadPeak
1
bam
Organism
111
Homo sapiens
Biosample type
91
tissue
10
in vitro differentiated cells
10
primary cell
Organ
75
kidney
26
pancreas
10
epithelium
2
connective tissue
Project
90
AMP
11
T1D
10
HPAP
Genome assembly (visualization)
88
GRCh38
13
hg19
Lab
AMP-T2D consortium
75
Katalin Susztak, Upenn
16
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
files.file_type!
tar
month_released!
May, 2022
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
111 results
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Clear Filters
ATAC-seq
tissue
kidney
75
islet of Langerhans
16
in vitro differentiated cells
embryonic stem cell
6
Progenitor cell of Hypothalamus (neural progenitor cell)
1
adipocyte
1
neuron cell of Hypothalamus (neuron)
1
osteoblast
1
primary cell
pancreatic alpha cell
7
pancreatic beta cell
3
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