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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
total RNA-seq
29
ChIP-seq
5
WGBS
2
STARR-seq
2
pCHi-C
1
DNase-seq
1
Hi-C
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
31
Transcription
29
DNA binding
5
DNA methylation
1
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
control
20
histone
20
histone modification
12
broad histone mark
9
transcription factor
8
narrow histone mark
4
recombinant protein
3
RNA binding protein
Date released
24
August, 2017
20
May, 2022
12
August, 2021
6
November, 2017
4
November, 2018
1
December, 2018
1
February, 2020
1
February, 2021
1
July, 2019
1
March, 2020
1
May, 2020
Available data
17
tagAlign
12
fastq
12
tsv
9
bam
5
bigWig
4
bed narrowPeak
4
bigBed narrowPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
csv
1
vcf
Organism
72
Homo sapiens
Biosample type
48
tissue
24
cell line
Organ
237
pancreas
213
kidney
185
epithelium
185
heart
97
brain
89
bone element
72
liver
61
connective tissue
51
blood vessel
51
vasculature
41
adipose tissue
39
artery
26
eye
20
lung
17
musculature of body
9
limb
8
blood
8
bodily fluid
5
gonad
5
ovary
4
skeleton
3
spleen
3
vein
2
embryo
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
72
AMP
Genome assembly (visualization)
hg19
530
GRCh38
Lab
40
AMP-T2D consortium
20
Karen Mohlke, UNC
12
Bing Ren, UCSD
Audit category:
1
missing controlled_by
files.file_type!
tar
assembly!
hg19
target.investigated_as!
control
BIOSAMPLE
ASSAY
72 results
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total RNA-seq
ChIP-seq
WGBS
STARR-seq
pCHi-C
DNase-seq
Hi-C
single cell RNA-seq
whole genome sequencing assay
tissue
liver
20
20
3
1
1
right lobe of liver
1
1
1
cell line
HepG2
9
9
1
2
1
1
1
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