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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
410
ChIP-seq
23
ATAC-seq
5
DNase-seq
2
Hi-C
Assay category
410
DNA binding
28
DNA accessibility
2
3D chromatin structure
Target of assay
326
transcription factor
81
histone modification
81
recombinant protein
80
histone
55
RNA binding protein
51
narrow histone mark
29
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
246
November, 2017
51
November, 2018
50
December, 2017
27
May, 2020
20
May, 2022
18
August, 2017
18
August, 2021
6
October, 2019
2
June, 2019
1
February, 2021
1
March, 2020
Available data
681
bam
622
bigWig
465
fastq
441
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
440
Homo sapiens
Biosample type
306
cell line
114
tissue
14
in vitro differentiated cells
6
primary cell
Organ
440
liver
221
pancreas
203
brain
194
heart
183
kidney
155
epithelium
134
vasculature
130
blood vessel
92
limb
76
connective tissue
74
artery
62
musculature of body
54
blood
54
bodily fluid
33
eye
27
nerve
18
ureter
14
adipose tissue
14
embryo
14
spleen
13
vein
8
bone element
8
skeleton
1
pituitary gland
Project
440
AMP
Genome assembly (visualization)
436
hg19
367
GRCh38
Lab
405
AMP-T2D consortium
20
Karen Mohlke, UNC
15
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
8
inconsistent control run_type
files.file_type!
tar
BIOSAMPLE
ASSAY
440 results
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ChIP-seq
ATAC-seq
DNase-seq
Hi-C
cell line
HepG2
304
1
1
tissue
liver
82
20
2
1
right lobe of liver
7
1
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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