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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
335
ChIP-seq
Assay category
335
DNA binding
Target of assay
335
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
57
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
238
November, 2017
49
November, 2018
33
December, 2017
11
August, 2021
4
August, 2017
Available data
333
bigWig
329
bed narrowPeak
327
fastq
326
bam
314
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
tar
2
bed bed3+
Organism
335
Homo sapiens
Biosample type
294
cell line
39
tissue
2
in vitro differentiated cells
Organ
335
liver
51
blood
51
bodily fluid
40
connective tissue
19
pancreas
17
adipose tissue
17
heart
10
kidney
9
epithelium
9
vasculature
8
blood vessel
6
spleen
5
artery
3
brain
3
embryo
1
eye
Project
335
AMP
Genome assembly (visualization)
326
hg19
286
GRCh38
Lab
324
AMP-T2D consortium
11
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
files.file_type!
tar
organ_slims!
bone element
BIOSAMPLE
ASSAY
335 results
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Clear Filters
ChIP-seq
cell line
HepG2
294
tissue
liver
37
right lobe of liver
2
in vitro differentiated cells
hepatocyte
2
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