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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ChIP-seq
Assay category
21
DNA binding
Target of assay
986
histone modification
985
histone
498
narrow histone mark
486
broad histone mark
427
transcription factor
337
control
87
RNA binding protein
72
recombinant protein
21
chromatin remodeller
5
nucleotide modification
2
other context
2
other post-translational modification
Date released
9
November, 2017
6
January, 2019
3
December, 2017
2
December, 2018
November, 2018
1
August, 2017
Available data
21
bam
21
bed narrowPeak
21
bigBed narrowPeak
21
bigWig
21
fastq
4
bed broadPeak
4
bigBed broadPeak
Organism
21
Homo sapiens
Biosample type
17
cell line
2
tissue
1
in vitro differentiated cells
1
primary cell
Organ
12
liver
8
blood
8
bodily fluid
1
epithelium
Project
21
AMP
Genome assembly (visualization)
21
hg19
20
GRCh38
Lab
21
AMP-T2D consortium
Audit category:
3
inconsistent control
Audit category:
1
missing controlled_by
Audit category:
inconsistent control read length
4
inconsistent control run_type
files.file_type!
tar
month_released!
November, 2018
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
21 results
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ChIP-seq
cell line
HepG2
9
GM12878
8
tissue
liver
2
in vitro differentiated cells
hepatocyte
1
primary cell
skeletal muscle myoblast
1
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