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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
63
ChIP-seq
Assay category
63
DNA binding
Target of assay
331
control
213
histone
213
histone modification
109
broad histone mark
104
narrow histone mark
63
transcription factor
13
RNA binding protein
5
nucleotide modification
2
chromatin remodeller
1
recombinant protein
Date released
37
November, 2017
12
May, 2021
11
August, 2021
1
April, 2019
1
August, 2017
1
November, 2018
Available data
48
bigWig
44
bed narrowPeak
42
bam
42
fastq
33
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
tar
Organism
63
Homo sapiens
Biosample type
49
cell line
12
in vitro differentiated cells
1
primary cell
1
tissue
Organ
49
liver
1
kidney
Project
63
AMP
Genome assembly (visualization)
484
hg19
GRCh38
Lab
40
AMP-T2D consortium
12
Kyle Gaulton, UCSD
11
Bing Ren, UCSD
Audit category:
8
missing controlled_by
Audit category:
2
inconsistent control read length
2
inconsistent control run_type
files.file_type!
tar
assembly!
GRCh38
BIOSAMPLE
ASSAY
63 results
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ChIP-seq
cell line
HepG2
49
in vitro differentiated cells
embryonic stem cell
12
primary cell
skeletal muscle myoblast
1
tissue
kidney
1
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