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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ATAC-seq
4
DNase-seq
Assay category
59
DNA binding
39
DNA accessibility
5
3D chromatin structure
2
DNA methylation
2
Transcription
Date released
16
May, 2021
7
November, 2019
4
June, 2019
4
May, 2020
4
October, 2019
3
February, 2023
1
March, 2020
Available data
19
bam
16
bed narrowPeak
11
bigWig
tsv
6
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
bigBed narrowPeak
1
bed bedgraph
1
txt
Organism
39
Homo sapiens
Biosample type
18
cell line
10
in vitro differentiated cells
9
primary cell
2
tissue
Organ
20
epithelium
18
pancreas
4
connective tissue
1
adipose tissue
1
heart
1
kidney
1
limb
1
liver
1
musculature of body
1
vasculature
Project
39
AMP
Genome assembly (visualization)
23
hg19
15
GRCh38
Lab
38
AMP-T2D consortium
1
Struan F.A. Grant, CHOP
Audit category:
39
inconsistent ontology term
29
audit script error
1
inconsistent replicate
files.file_type!
tsv
BIOSAMPLE
ASSAY
39 results
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ATAC-seq
DNase-seq
cell line
EndoC_BH1
18
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
immature adipocyte
2
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
neuron cell of Hypothalamus (neuron)
1
primary cell
central memory CD8-positive, alpha-beta T cell
2
naive B cel
2
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
cardiac fibroblast
1
+ See 2 more…
tissue
adipose tissue(adipose white tissue)
1
muscle of leg
1
See all biosamples
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