Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
198
ChIP-seq
ATAC-seq
9
total RNA-seq
4
GRO-seq
4
Hi-C
3
pCHi-C
2
Capture-C
1
DNase-seq
Assay category
198
DNA binding
9
Transcription
4
3D chromatin structure
1
DNA accessibility
Target of assay
112
histone
112
histone modification
56
broad histone mark
55
narrow histone mark
49
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
68
August, 2017
48
May, 2021
43
December, 2017
24
February, 2018
23
August, 2021
4
February, 2023
4
January, 2018
4
March, 2020
2
October, 2019
1
August, 2018
Available data
274
bam
247
bigWig
141
fastq
tsv
111
bed narrowPeak
40
tagAlign
21
bed bed3+
15
bigBed narrowPeak
7
bedpe bed3+
4
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
221
Homo sapiens
Biosample type
1402
tissue
630
primary cell
515
cell line
221
in vitro differentiated cells
6
stem cell
Organ
75
connective tissue
23
embryo
22
epithelium
15
liver
3
pancreas
1
adipose tissue
Project
221
AMP
Genome assembly (visualization)
128
hg19
121
GRCh38
4
hg18
Lab
177
AMP-T2D consortium
42
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
15
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
files.file_type!
tsv
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
221 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
GRO-seq
Hi-C
pCHi-C
Capture-C
DNase-seq
in vitro differentiated cells
adipocyte
67
1
1
1
embryonic stem cell
40
5
neural progenitor cell
21
pancreatic endoderm
18
1
hepatocyte
15
+ See 15 more…
See all biosamples
Download