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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
85
single cell RNA-seq
49
ATAC-seq
48
snATAC-seq
41
WGBS
3
Hi-C
Assay category
177
Transcription
97
DNA accessibility
41
DNA methylation
3
3D chromatin structure
Date released
134
May, 2022
76
February, 2023
59
September, 2020
39
February, 2021
7
August, 2020
3
October, 2022
Available data
169
fastq
153
zippedFastqFolder
10
bigWig
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
318
Homo sapiens
Biosample type
318
primary cell
Organ
146
epithelium
146
pancreas
Project
318
HPAP
Genome assembly (visualization)
10
GRCh38
3
hg19
Lab
765
AMP-T2D consortium
318
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
93
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Bing Ren, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
files.file_type!
tsv
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
318 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
Hi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
25
1
pancreatic beta cell
11
16
16
1
exocrine cell
39
pancreatic acinar cell
4
1
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