Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
27
snATAC-seq
22
ATAC-seq
13
single cell RNA-seq
ChIP-seq
2
pCHi-C
Assay category
49
DNA accessibility
13
Transcription
Date released
200
May, 2022
189
February, 2023
187
June, 2019
153
August, 2021
148
February, 2021
102
May, 2020
61
May, 2021
59
September, 2020
56
October, 2019
47
September, 2023
43
July, 2019
28
November, 2019
26
August, 2017
19
April, 2020
18
November, 2018
16
January, 2021
16
March, 2020
15
May, 2023
15
September, 2018
November, 2020
8
January, 2018
8
October, 2017
7
August, 2020
5
March, 2019
5
March, 2023
5
September, 2017
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2018
1
December, 2019
Available data
564
bam
tsv
546
bigWig
89
txt
45
fastq
18
bed narrowPeak
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
148
Homo sapiens
Biosample type
93
tissue
41
primary cell
10
cell line
4
in vitro differentiated cells
Organ
92
bone element
8
artery
8
blood vessel
8
heart
8
skeleton
8
vasculature
6
connective tissue
6
limb
3
liver
Project
109
AMP
39
HPAP
Genome assembly (visualization)
24
hg19
18
GRCh38
Lab
109
AMP-T2D consortium
39
Klaus Kaestner, Upenn
Audit category:
84
inconsistent ontology term
27
audit script error
1
inconsistent replicate
files.file_type!
tsv
assay_title!
ChIP-seq
month_released!
November, 2020
BIOSAMPLE
ASSAY
148 results
search-icon
table-tab-icon
Clear Filters
RNA microarray
snATAC-seq
ATAC-seq
single cell RNA-seq
pCHi-C
tissue
bone element
84
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
+ See 5 more…
primary cell
Langerhans cell
27
12
osteoblast
1
1
cell line
smooth muscle cell of the coronary artery
8
HepG2
1
1
in vitro differentiated cells
adipocyte
4
See all biosamples
Download