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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ATAC-seq
ChIP-seq
3
single cell RNA-seq
2
Hi-C
1
total RNA-seq
Assay category
37
DNA accessibility
4
Transcription
2
3D chromatin structure
Date released
200
May, 2022
189
February, 2023
187
June, 2019
153
August, 2021
148
February, 2021
102
May, 2020
61
May, 2021
59
September, 2020
56
October, 2019
47
September, 2023
43
July, 2019
28
November, 2019
26
August, 2017
19
April, 2020
18
November, 2018
16
January, 2021
16
March, 2020
15
May, 2023
15
September, 2018
12
November, 2020
8
January, 2018
8
October, 2017
7
August, 2020
5
March, 2019
5
March, 2023
5
September, 2017
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2018
1
December, 2019
Available data
46
bam
26
bed narrowPeak
20
bigWig
tsv
2
bedpe bed3+
2
hic
Organism
43
Homo sapiens
Biosample type
36
tissue
5
in vitro differentiated cells
2
cell line
Organ
22
pancreas
14
kidney
2
adipose tissue
2
connective tissue
2
epithelium
Project
43
AMP
Genome assembly (visualization)
38
GRCh38
29
hg19
Lab
29
AMP-T2D consortium
14
Katalin Susztak, Upenn
Audit category:
8
inconsistent ontology term
files.file_type!
tsv
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
43 results
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Clear Filters
ATAC-seq
single cell RNA-seq
Hi-C
total RNA-seq
tissue
islet of Langerhans
19
1
kidney
11
3
adipose tissue
1
adipose tissue(adipose white tissue)
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
cell line
EndoC_BH1
1
1
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