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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
ATAC-seq
ChIP-seq
10
MeRIP-seq
2
Hi-C
1
DNase-seq
Assay category
28
DNA accessibility
2
3D chromatin structure
Target of assay
5
control
5
nucleotide modification
Date released
200
May, 2022
189
February, 2023
187
June, 2019
153
August, 2021
148
February, 2021
102
May, 2020
61
May, 2021
59
September, 2020
56
October, 2019
47
September, 2023
43
July, 2019
28
November, 2019
26
August, 2017
19
April, 2020
18
November, 2018
16
January, 2021
16
March, 2020
15
May, 2023
15
September, 2018
12
November, 2020
8
January, 2018
8
October, 2017
7
August, 2020
5
March, 2019
5
March, 2023
5
September, 2017
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2018
1
December, 2019
Available data
52
bam
28
bed narrowPeak
25
bigWig
tsv
2
bedpe bed3+
2
hic
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
40
Homo sapiens
Biosample type
25
tissue
8
cell line
5
in vitro differentiated cells
2
primary cell
Organ
32
pancreas
8
epithelium
3
connective tissue
1
adipose tissue
Project
40
AMP
Genome assembly (visualization)
30
hg19
28
GRCh38
Lab
30
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
14
inconsistent ontology term
files.file_type!
tsv
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
40 results
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Clear Filters
ATAC-seq
MeRIP-seq
Hi-C
DNase-seq
tissue
islet of Langerhans
19
4
1
adipose tissue(adipose white tissue)
1
cell line
EndoC_BH1
1
6
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
primary cell
osteoblast
1
1
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