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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1387
ChIP-seq
489
ATAC-seq
212
total RNA-seq
210
DNase-seq
158
single cell RNA-seq
85
RNA microarray
84
snATAC-seq
68
WGBS
30
Hi-C
25
pCHi-C
21
RRBS
5
FAIRE-seq
5
GRO-seq
4
MeRIP-seq
2
Capture-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
Assay category
294
DNA accessibility
Date released
187
June, 2019
27
February, 2021
22
May, 2022
16
January, 2021
10
April, 2020
9
November, 2018
8
October, 2019
6
August, 2021
5
August, 2017
2
February, 2023
1
August, 2022
1
November, 2020
Available data
207
bam
207
bed narrowPeak
207
bigBed narrowPeak
207
bigWig
205
bed broadPeak
205
bigBed broadPeak
204
bed bed3+
39
fastq
21
zippedFastqFolder
1
txt
Organism
293
Homo sapiens
Biosample type
206
tissue
87
primary cell
cell line
1
in vitro differentiated cells
Organ
86
kidney
36
limb
34
musculature of body
32
brain
30
heart
18
epithelium
18
pancreas
18
ureter
11
vasculature
10
lung
9
blood vessel
9
connective tissue
8
blood
8
bodily fluid
6
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
218
AMP
48
HPAP
18
T1D
10
LungMap
Genome assembly (visualization)
205
GRCh38
185
hg19
Lab
212
AMP-T2D consortium
48
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
Audit category:
29
audit script error
4
inconsistent ontology term
files.file_type!
tsv
biosample_type!
cell line
BIOSAMPLE
ASSAY
294 results
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DNase-seq
snATAC-seq
tissue
kidney
13
6
heart
18
muscle of arm
17
brain
14
muscle of leg
13
+ See 42 more…
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
cardiac fibroblast
3
kidney tubule cell
3
endothelial cell of umbilical vein
2
+ See 20 more…
in vitro differentiated cells
adipocyte
1
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