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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1871
ChIP-seq
517
ATAC-seq
212
DNase-seq
212
total RNA-seq
158
single cell RNA-seq
85
RNA microarray
84
snATAC-seq
69
WGBS
34
Hi-C
26
pCHi-C
21
RRBS
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
89
DNA accessibility
1
DNA sequencing
Date released
27
February, 2021
22
May, 2022
16
January, 2021
10
April, 2020
7
August, 2021
2
February, 2023
2
July, 2019
1
August, 2017
1
August, 2022
1
November, 2018
1
October, 2019
Available data
29
fastq
21
zippedFastqFolder
5
bam
5
bed narrowPeak
5
bigBed narrowPeak
5
bigWig
1
bed bed3+
1
tar
1
txt
1
vcf
Organism
89
Homo sapiens
Biosample type
57
primary cell
32
tissue
1
cell line
Organ
13
pancreas
10
lung
8
blood
8
bodily fluid
7
kidney
1
blood vessel
1
brain
1
epithelium
1
liver
1
musculature of body
1
vasculature
1
vein
Project
48
HPAP
18
T1D
14
AMP
10
LungMap
Genome assembly (visualization)
6
hg19
Lab
48
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
7
AMP-T2D consortium
6
Katalin Susztak, Upenn
1
Bing Ren, UCSD
Audit category:
29
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files.file_type!
tsv
BIOSAMPLE
ASSAY
90 results
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snATAC-seq
FAIRE-seq
whole genome sequencing assay
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
endothelial cell of umbilical vein
1
tissue
lung
10
islet of Langerhans
7
1
kidney
6
1
pancreas
4
1
frontal cortex
1
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cell line
HepG2
1
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