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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
ChIP-seq
25
ATAC-seq
9
total RNA-seq
4
GRO-seq
4
Hi-C
3
pCHi-C
2
Capture-C
Assay category
78
DNA binding
25
DNA accessibility
9
Transcription
4
3D chromatin structure
Target of assay
34
histone
34
histone modification
32
control
19
broad histone mark
15
narrow histone mark
12
transcription factor
5
RNA binding protein
Date released
48
May, 2021
19
August, 2017
16
February, 2023
12
August, 2021
8
February, 2018
5
December, 2017
4
February, 2021
4
January, 2018
4
March, 2020
4
October, 2019
1
August, 2018
Available data
26
bam
23
fastq
22
tagAlign
16
bigWig
7
bed bedgraph
7
bedpe bed3+
6
bed bed3+
5
bed bed3
4
bed narrowPeak
4
hic
tsv
3
txt
2
bigBed narrowPeak
2
ibed
Organism
125
Homo sapiens
Biosample type
759
tissue
534
primary cell
183
cell line
125
in vitro differentiated cells
3
stem cell
Organ
43
connective tissue
8
embryo
4
epithelium
1
adipose tissue
1
liver
1
pancreas
Project
125
AMP
Genome assembly (visualization)
170
hg19
GRCh38
4
hg18
Lab
71
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
13
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
tsv
assembly!
GRCh38
BIOSAMPLE
ASSAY
125 results
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ChIP-seq
ATAC-seq
total RNA-seq
GRO-seq
Hi-C
pCHi-C
Capture-C
in vitro differentiated cells
embryonic stem cell
38
6
5
adipocyte
19
8
1
1
neural progenitor cell
8
pancreatic endoderm
5
1
chondrocyte
5
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