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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
12
ATAC-seq
2
Capture-C
2
Hi-C
Assay category
74
DNA binding
12
DNA accessibility
2
3D chromatin structure
Target of assay
48
histone
48
histone modification
26
broad histone mark
26
transcription factor
22
narrow histone mark
12
RNA binding protein
Date released
281
November, 2017
201
October, 2019
187
August, 2017
187
June, 2019
143
May, 2021
97
May, 2019
77
December, 2017
72
May, 2020
71
November, 2018
65
April, 2019
46
September, 2018
45
August, 2021
45
February, 2023
45
October, 2018
39
May, 2022
39
November, 2019
30
December, 2018
29
February, 2021
26
July, 2019
21
January, 2019
17
March, 2020
16
February, 2018
13
October, 2017
7
September, 2017
3
January, 2018
3
March, 2019
3
October, 2022
2
November, 2020
1
May, 2023
Available data
93
bigWig
87
bam
86
bed narrowPeak
45
bigBed narrowPeak
33
fastq
tsv
15
tagAlign
5
bed bed3+
2
hic
1
bedpe bed3+
Organism
90
Homo sapiens
Biosample type
46
tissue
26
in vitro differentiated cells
15
cell line
3
primary cell
Organ
40
pancreas
18
liver
9
connective tissue
5
adipose tissue
3
epithelium
1
kidney
Project
90
AMP
Genome assembly (visualization)
135
GRCh38
90
hg19
Lab
70
AMP-T2D consortium
15
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
1
Katalin Susztak, Upenn
Audit category:
1
inconsistent control read length
files.file_type!
tsv
BIOSAMPLE
ASSAY
90 results
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Clear Filters
ChIP-seq
ATAC-seq
Capture-C
Hi-C
tissue
body of pancreas
25
endocrine pancreas
14
omental fat pad
3
subcutaneous adipose tissue
2
kidney
1
+ See 1 more…
in vitro differentiated cells
neural progenitor cell
12
10
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
14
1
primary cell
hepatocyte
3
See all biosamples
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