Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
22
DNase-seq
3
Hi-C
2
RRBS
1
ATAC-seq
1
FAIRE-seq
Assay category
123
DNA binding
24
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
117
histone
117
histone modification
92
narrow histone mark
25
broad histone mark
3
RNA binding protein
3
control
3
transcription factor
Date released
77
October, 2019
25
May, 2019
20
June, 2019
15
November, 2017
6
July, 2019
6
October, 2017
2
November, 2018
1
February, 2023
Available data
159
bigWig
155
bam
141
bed narrowPeak
65
bigBed narrowPeak
43
tagAlign
37
bed broadPeak
28
bigBed broadPeak
25
bed bed3+
17
fastq
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
152
Homo sapiens
Biosample type
134
tissue
18
primary cell
Organ
463
liver
250
pancreas
164
epithelium
152
brain
118
heart
117
kidney
115
connective tissue
107
vasculature
101
blood vessel
92
limb
67
musculature of body
55
blood
55
bodily fluid
39
artery
34
eye
28
adipose tissue
27
nerve
18
ureter
17
vein
15
embryo
14
spleen
12
bone element
12
skeleton
1
pericardium
1
pituitary gland
Project
152
AMP
Genome assembly (visualization)
205
GRCh38
152
hg19
Lab
152
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
files.file_type!
tsv
BIOSAMPLE
ASSAY
152 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
Hi-C
RRBS
ATAC-seq
FAIRE-seq
tissue
brain
11
14
1
1
angular gyrus
14
temporal lobe
13
superior frontal gyrus
4
frontal cortex
2
1
+ See 64 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
astrocyte of the hippocampus
1
See all biosamples
Download