Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
DNase-seq
3
Hi-C
2
RRBS
1
ATAC-seq
1
FAIRE-seq
Assay category
123
DNA binding
3
3D chromatin structure
2
DNA accessibility
2
DNA methylation
Target of assay
117
histone
117
histone modification
92
narrow histone mark
25
broad histone mark
3
RNA binding protein
3
control
3
transcription factor
Date released
77
October, 2019
25
May, 2019
15
November, 2017
6
July, 2019
6
October, 2017
1
February, 2023
Available data
137
bigWig
133
bam
119
bed narrowPeak
43
bigBed narrowPeak
43
tagAlign
15
bed broadPeak
15
fastq
tsv
6
bigBed broadPeak
3
bed bed3+
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
130
Homo sapiens
Biosample type
117
tissue
13
primary cell
Organ
458
liver
244
pancreas
153
epithelium
130
brain
107
connective tissue
97
vasculature
93
blood vessel
91
heart
56
limb
55
blood
55
bodily fluid
45
kidney
35
artery
34
musculature of body
30
eye
26
adipose tissue
25
nerve
15
embryo
15
vein
13
spleen
12
bone element
12
skeleton
1
pericardium
1
pituitary gland
Project
130
AMP
Genome assembly (visualization)
173
GRCh38
130
hg19
Lab
130
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
files.file_type!
tsv
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
130 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
Hi-C
RRBS
ATAC-seq
FAIRE-seq
tissue
angular gyrus
14
brain
11
1
1
temporal lobe
13
superior frontal gyrus
4
anterior cingulate gyrus
2
+ See 64 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
brain pericyte
1
See all biosamples
Download