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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ChIP-seq
22
DNase-seq
3
Hi-C
2
RRBS
1
ATAC-seq
1
FAIRE-seq
Assay category
80
DNA binding
24
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
74
histone
74
histone modification
56
narrow histone mark
18
broad histone mark
3
RNA binding protein
3
control
3
transcription factor
Date released
46
October, 2019
25
May, 2019
20
June, 2019
9
November, 2017
6
July, 2019
2
November, 2018
1
February, 2023
Available data
159
bigWig
155
bam
141
bed narrowPeak
65
bigBed narrowPeak
tagAlign
37
bed broadPeak
28
bigBed broadPeak
25
bed bed3+
17
fastq
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
109
Homo sapiens
Biosample type
91
tissue
18
primary cell
Organ
421
liver
236
pancreas
159
epithelium
117
kidney
114
connective tissue
114
heart
109
brain
103
vasculature
97
blood vessel
92
limb
55
blood
55
bodily fluid
54
musculature of body
35
artery
34
eye
27
adipose tissue
27
nerve
18
ureter
17
vein
15
embryo
14
spleen
12
bone element
12
skeleton
1
pericardium
Project
109
AMP
Genome assembly (visualization)
123
GRCh38
109
hg19
Lab
109
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
files.file_type!
tsv
tagAlign
BIOSAMPLE
ASSAY
109 results
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ChIP-seq
DNase-seq
Hi-C
RRBS
ATAC-seq
FAIRE-seq
tissue
brain
5
14
1
1
temporal lobe
13
angular gyrus
12
frontal cortex
2
1
superior frontal gyrus
3
+ See 38 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
astrocyte of the hippocampus
1
See all biosamples
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