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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
125
ChIP-seq
28
ATAC-seq
26
DNase-seq
3
Hi-C
3
RRBS
1
FAIRE-seq
Assay category
125
DNA binding
55
DNA accessibility
3
3D chromatin structure
3
DNA methylation
Target of assay
118
histone
118
histone modification
93
narrow histone mark
25
broad histone mark
4
RNA binding protein
4
transcription factor
3
control
Date released
77
October, 2019
28
February, 2023
26
June, 2019
25
May, 2019
15
November, 2017
7
July, 2019
6
October, 2017
2
November, 2018
Available data
174
bed narrowPeak
165
bigWig
161
bam
71
bigBed narrowPeak
43
tagAlign
41
bed broadPeak
32
bigBed broadPeak
29
bed bed3+
17
fastq
tsv
3
bed bedMethyl
3
bigBed bedMethyl
3
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
186
Homo sapiens
Biosample type
164
tissue
22
primary cell
Organ
463
liver
250
pancreas
164
epithelium
152
brain
118
heart
117
kidney
115
connective tissue
107
vasculature
101
blood vessel
92
limb
67
musculature of body
55
blood
55
bodily fluid
39
artery
34
eye
28
adipose tissue
27
nerve
18
ureter
17
vein
15
embryo
14
spleen
12
bone element
12
skeleton
1
pericardium
1
pituitary gland
Project
186
AMP
Genome assembly (visualization)
211
GRCh38
186
hg19
Lab
186
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
files.file_type!
tsv
BIOSAMPLE
ASSAY
186 results
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ChIP-seq
ATAC-seq
DNase-seq
Hi-C
RRBS
FAIRE-seq
tissue
brain
11
1
14
1
retina
15
3
angular gyrus
14
temporal lobe
13
pigmented layer of retina
12
+ See 66 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
retinal pigment epithelial cell
2
1
1
brain pericyte
1
1
+ See 1 more…
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