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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ChIP-seq
2
ATAC-seq
2
Hi-C
1
DNase-seq
Assay category
19
DNA binding
3
DNA accessibility
2
3D chromatin structure
Target of assay
18
histone
18
histone modification
9
broad histone mark
9
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
13
November, 2019
8
October, 2019
2
March, 2020
1
May, 2021
Available data
56
bigWig
54
bam
tsv
21
bed narrowPeak
7
bigBed narrowPeak
2
bed bed3+
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
1
hdf5
1
hic
Organism
24
Homo sapiens
Biosample type
141
tissue
83
primary cell
24
cell line
2
in vitro differentiated cells
Organ
325
liver
55
blood
55
bodily fluid
24
pancreas
17
epithelium
12
artery
12
blood vessel
12
heart
12
vasculature
8
kidney
Project
22
AMP
2
T1D
Genome assembly (visualization)
24
hg19
22
GRCh38
Lab
24
AMP-T2D consortium
Audit category:
16
inconsistent ontology term
Audit category:
1
inconsistent assembly
files.file_type!
tsv
BIOSAMPLE
ASSAY
24 results
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ChIP-seq
ATAC-seq
Hi-C
DNase-seq
cell line
EndoC_BH1
13
2
1
Panc1
6
1
1
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