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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
179
ChIP-seq
38
ATAC-seq
9
total RNA-seq
4
GRO-seq
4
Hi-C
3
pCHi-C
1
DNase-seq
Assay category
179
DNA binding
39
DNA accessibility
9
Transcription
4
3D chromatin structure
Target of assay
104
histone
104
histone modification
52
broad histone mark
51
narrow histone mark
43
transcription factor
32
control
11
RNA binding protein
3
chromatin remodeller
Date released
61
August, 2017
53
May, 2021
33
August, 2021
31
December, 2017
24
February, 2018
12
February, 2023
6
October, 2019
5
November, 2019
4
February, 2021
4
January, 2018
4
March, 2020
1
August, 2018
Available data
291
bam
259
bigWig
141
fastq
132
bed narrowPeak
tsv
40
tagAlign
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
238
Homo sapiens
Biosample type
1495
tissue
750
primary cell
540
cell line
238
in vitro differentiated cells
3
stem cell
Organ
79
connective tissue
22
epithelium
20
embryo
15
liver
3
pancreas
1
adipose tissue
Project
238
AMP
Genome assembly (visualization)
145
hg19
119
GRCh38
4
hg18
Lab
186
AMP-T2D consortium
47
Kyle Gaulton, UCSD
5
Struan F.A. Grant, CHOP
Audit category:
23
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
9
inconsistent control read length
files.file_type!
tsv
bed bed3+
audit.ERROR.category!
audit script error
BIOSAMPLE
ASSAY
238 results
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ChIP-seq
ATAC-seq
total RNA-seq
GRO-seq
Hi-C
pCHi-C
DNase-seq
in vitro differentiated cells
adipocyte
60
7
1
1
embryonic stem cell
40
6
5
neural progenitor cell
21
10
pancreatic endoderm
15
1
hepatocyte
15
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