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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
1
GRO-seq
1
pCHi-C
Assay category
22
DNA binding
Target of assay
12
histone
12
histone modification
8
narrow histone mark
7
control
4
broad histone mark
3
transcription factor
Date released
13
December, 2017
9
February, 2018
1
January, 2018
1
May, 2021
Available data
36
bam
29
bigWig
27
fastq
14
bed narrowPeak
tsv
3
bed bed3+
Organism
24
Homo sapiens
Biosample type
23
in vitro differentiated cells
1
primary cell
Organ
617
liver
525
pancreas
364
epithelium
330
kidney
260
brain
225
heart
206
connective tissue
167
vasculature
161
blood vessel
115
limb
101
bone element
90
adipose tissue
86
musculature of body
83
artery
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
21
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
23
AMP
1
T1D
Genome assembly (visualization)
15
GRCh38
15
hg19
1
hg18
Lab
23
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
files.file_type!
tsv
audit.ERROR.category!
audit script error
BIOSAMPLE
ASSAY
24 results
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Clear Filters
ChIP-seq
GRO-seq
pCHi-C
in vitro differentiated cells
pancreatic endoderm
18
1
Hepatic endoderm
4
primary cell
megakaryocyte
1
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