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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
53
total RNA-seq
49
ATAC-seq
41
WGBS
22
ChIP-seq
8
DNase-seq
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
57
DNA accessibility
53
Transcription
41
DNA methylation
22
DNA binding
Target of assay
19
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
80
May, 2022
38
February, 2023
19
September, 2020
12
August, 2017
8
October, 2019
7
August, 2020
7
June, 2019
1
August, 2021
1
December, 2017
1
May, 2021
Available data
82
fastq
80
zippedFastqFolder
28
bam
16
bigWig
tsv
6
bed bed3+
6
bed broadPeak
6
bed narrowPeak
6
bigBed broadPeak
6
bigBed narrowPeak
2
tagAlign
Organism
173
Homo sapiens
Biosample type
171
primary cell
2
in vitro differentiated cells
1
cell line
Organ
253
pancreas
208
kidney
174
epithelium
154
liver
108
brain
106
heart
87
connective tissue
62
adipose tissue
61
blood vessel
61
vasculature
44
artery
23
limb
22
eye
19
lung
19
musculature of body
14
blood
14
bodily fluid
11
nerve
10
spleen
6
embryo
5
bone element
5
vein
4
gonad
4
ovary
4
skeleton
1
bone marrow
1
lymph node
1
pituitary gland
1
skin of body
1
thymus
Project
143
HPAP
31
AMP
Genome assembly (visualization)
hg19
126
GRCh38
Lab
143
Klaus Kaestner, Upenn
31
AMP-T2D consortium
Audit category:
inconsistent ontology term
files.file_type!
tsv
audit.ERROR.category!
inconsistent ontology term
assembly!
hg19
BIOSAMPLE
ASSAY
174 results
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total RNA-seq
ATAC-seq
WGBS
ChIP-seq
DNase-seq
CRISPR genome editing followed by sgRNA sequencing
primary cell
pancreatic alpha cell
42
29
25
6
pancreatic beta cell
11
16
16
6
endothelial cell of umbilical vein
5
pancreatic acinar cell
4
kidney tubule cell
3
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in vitro differentiated cells
hepatocyte
1
pancreatic PP cell
1
cell line
EndoC_BH1
1
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