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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
35
DNase-seq
8
ATAC-seq
4
Hi-C
1
WGBS
Assay category
66
DNA binding
43
DNA accessibility
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
65
October, 2019
31
June, 2019
7
May, 2019
6
February, 2021
5
July, 2019
Available data
113
bam
91
bed narrowPeak
90
bigWig
83
bigBed narrowPeak
35
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
114
Homo sapiens
Biosample type
114
tissue
Organ
616
liver
487
pancreas
313
epithelium
312
kidney
258
brain
219
heart
184
connective tissue
167
vasculature
162
blood vessel
114
limb
89
adipose tissue
83
artery
78
musculature of body
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
22
vein
19
embryo
19
lung
18
ureter
17
bone element
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
114
AMP
Genome assembly (visualization)
91
GRCh38
91
hg19
Lab
114
AMP-T2D consortium
Audit category:
inconsistent ontology term
files.file_type!
tsv
audit.ERROR.category!
inconsistent ontology term
lab.title!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
114 results
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ChIP-seq
DNase-seq
ATAC-seq
Hi-C
WGBS
tissue
tibial nerve
35
2
1
tibial artery
23
2
1
muscle of leg
7
12
1
muscle of arm
17
gastrocnemius medialis
4
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