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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
31
ChIP-seq
6
Hi-C
5
RRBS
1
ATAC-seq
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
34
DNA accessibility
31
DNA binding
6
3D chromatin structure
6
DNA methylation
1
Transcription
Target of assay
26
histone
26
histone modification
16
broad histone mark
10
narrow histone mark
5
control
Date released
34
June, 2019
26
August, 2017
7
May, 2019
6
July, 2019
2
March, 2020
2
May, 2022
1
January, 2018
Available data
60
bigWig
52
bed narrowPeak
48
bam
45
bed broadPeak
39
bigBed narrowPeak
33
bed bed3+
32
bigBed broadPeak
15
tagAlign
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
78
Homo sapiens
Biosample type
74
tissue
4
primary cell
Organ
616
liver
487
pancreas
313
epithelium
312
kidney
258
brain
219
heart
184
connective tissue
167
vasculature
162
blood vessel
114
limb
89
adipose tissue
83
artery
78
musculature of body
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
22
vein
19
embryo
19
lung
18
ureter
17
bone element
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
78
AMP
Genome assembly (visualization)
59
hg19
39
GRCh38
Lab
78
AMP-T2D consortium
Audit category:
inconsistent ontology term
1
audit script error
files.file_type!
tsv
audit.ERROR.category!
inconsistent ontology term
lab.title!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
78 results
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DNase-seq
ChIP-seq
Hi-C
RRBS
ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
muscle of leg
12
7
1
muscle of arm
17
gastrocnemius medialis
4
psoas muscle
2
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primary cell
skeletal muscle cell
1
2
1
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