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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
ChIP-seq
8
snATAC-seq
2
ATAC-seq
2
DNase-seq
Assay category
95
DNA binding
12
DNA accessibility
Target of assay
51
transcription factor
25
histone
25
histone modification
17
control
16
broad histone mark
10
RNA binding protein
10
chromatin remodeller
9
narrow histone mark
Date released
38
October, 2019
27
December, 2018
18
January, 2019
15
November, 2018
8
January, 2021
1
January, 2018
Available data
102
bam
86
bigWig
81
bed narrowPeak
80
bigBed narrowPeak
60
fastq
tsv
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
107
Homo sapiens
Biosample type
61
cell line
38
tissue
8
primary cell
Organ
616
liver
487
pancreas
313
epithelium
312
kidney
258
brain
219
heart
188
connective tissue
167
vasculature
162
blood vessel
114
limb
89
adipose tissue
83
artery
78
musculature of body
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
22
vein
19
embryo
19
lung
18
ureter
17
bone element
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
99
AMP
8
T1D
Genome assembly (visualization)
82
hg19
81
GRCh38
Lab
99
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
files.file_type!
tsv
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
107 results
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Clear Filters
ChIP-seq
snATAC-seq
ATAC-seq
DNase-seq
cell line
GM12878
60
1
tissue
tibial nerve
35
1
2
primary cell
peripheral blood mononuclear cell
8
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