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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
ChIP-seq
6
ATAC-seq
3
DNase-seq
2
RRBS
Assay category
25
DNA binding
9
DNA accessibility
2
DNA methylation
Target of assay
17
histone
17
histone modification
9
narrow histone mark
8
broad histone mark
5
control
3
RNA binding protein
3
transcription factor
Date released
25
June, 2019
4
May, 2020
3
May, 2019
2
July, 2019
2
October, 2019
May, 2021
Available data
45
bam
38
bigWig
25
bed narrowPeak
23
bigBed narrowPeak
tsv
7
fastq
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
36
Homo sapiens
Biosample type
88
tissue
36
cell line
36
primary cell
22
in vitro differentiated cells
Organ
13
connective tissue
9
epithelium
8
kidney
8
musculature of body
6
heart
1
liver
1
vasculature
Project
36
AMP
Genome assembly (visualization)
31
hg19
25
GRCh38
Lab
36
AMP-T2D consortium
Audit category:
36
inconsistent ontology term
31
audit script error
files.file_type!
tsv
month_released!
May, 2021
BIOSAMPLE
ASSAY
36 results
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ChIP-seq
ATAC-seq
DNase-seq
RRBS
primary cell
skeletal muscle satellite cell
8
mesenchymal stem cell
7
cardiac fibroblast
4
1
1
epithelial cell of proximal tubule
3
1
1
kidney epithelial cell
3
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