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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
85
single cell RNA-seq
49
ATAC-seq
48
snATAC-seq
41
WGBS
3
Hi-C
Assay category
97
DNA accessibility
85
Transcription
41
DNA methylation
3
3D chromatin structure
Date released
134
May, 2022
43
September, 2020
39
February, 2021
7
August, 2020
3
October, 2022
Available data
153
zippedFastqFolder
77
fastq
10
bigWig
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
226
Homo sapiens
Biosample type
226
primary cell
Organ
93
epithelium
93
pancreas
Project
226
HPAP
Genome assembly (visualization)
10
GRCh38
3
hg19
Lab
2388
AMP-T2D consortium
228
Kyle Gaulton, UCSD
226
Klaus Kaestner, Upenn
93
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
28
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
files.file_type!
tsv
audit.WARNING.category!
inconsistent assembly
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
226 results
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Clear Filters
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
Hi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
29
25
1
pancreatic beta cell
16
16
1
pancreatic acinar cell
4
1
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