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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
ChIP-seq
18
snATAC-seq
17
pCHi-C
11
ATAC-seq
5
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
84
DNA binding
29
DNA accessibility
5
Transcription
Target of assay
84
histone
84
histone modification
44
broad histone mark
40
narrow histone mark
Date released
101
May, 2021
23
February, 2023
16
January, 2021
Available data
180
bam
180
bigWig
tsv
84
bed narrowPeak
84
tagAlign
Organism
140
Homo sapiens
Biosample type
108
primary cell
27
tissue
5
cell line
Organ
26
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
140
T1D
107
AMP
Genome assembly (visualization)
84
GRCh38
84
hg19
Lab
140
Kyle Gaulton, UCSD
6
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
tsv
BIOSAMPLE
ASSAY
140 results
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ChIP-seq
snATAC-seq
pCHi-C
ATAC-seq
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
1
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
+ See 11 more…
tissue
islet of Langerhans
6
11
5
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
See all biosamples
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