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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1387
ChIP-seq
489
ATAC-seq
210
DNase-seq
85
RNA microarray
84
snATAC-seq
68
WGBS
30
Hi-C
25
pCHi-C
21
RRBS
5
FAIRE-seq
5
GRO-seq
4
MeRIP-seq
2
Capture-C
1
DNAme array
Assay category
68
DNA methylation
Date released
41
May, 2022
12
July, 2019
9
August, 2017
6
November, 2018
Available data
41
zippedFastqFolder
17
bam
16
bed bedMethyl
16
bigBed bedMethyl
16
bigWig
16
fastq
tsv
Organism
68
Homo sapiens
Biosample type
41
primary cell
27
tissue
cell line
Organ
45
pancreas
41
epithelium
8
heart
6
adipose tissue
6
connective tissue
4
liver
2
blood vessel
2
spleen
2
vasculature
1
limb
1
musculature of body
Project
41
HPAP
27
AMP
Genome assembly (visualization)
16
GRCh38
Lab
41
Klaus Kaestner, Upenn
27
AMP-T2D consortium
files.file_type!
tsv
biosample_type!
cell line
assay_slims!
Transcription
BIOSAMPLE
ASSAY
68 results
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WGBS
primary cell
pancreatic alpha cell
25
pancreatic beta cell
16
tissue
heart left ventricle
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
aorta
2
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