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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
3
ATAC-seq
1
snATAC-seq
Assay category
Transcription
4
DNA accessibility
Date released
84
February, 2021
3
February, 2023
1
May, 2022
Available data
1508
bam
1413
bed narrowPeak
1349
bigWig
687
bigBed narrowPeak
565
fastq
378
tagAlign
268
bed bed3+
263
bed broadPeak
226
bigBed broadPeak
101
zippedFastqFolder
88
txt
64
xls
tsv
35
bed bedMethyl
35
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
7
bed bedgraph
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
88
Homo sapiens
Biosample type
85
tissue
3
in vitro differentiated cells
cell line
Organ
84
bone element
1
musculature of body
Project
88
AMP
Genome assembly (visualization)
4
hg19
Lab
85
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
1
audit script error
files.file_type!
tsv
biosample_type!
cell line
assay_slims!
Transcription
BIOSAMPLE
ASSAY
88 results
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RNA microarray
ATAC-seq
snATAC-seq
tissue
bone element
84
skeletal muscle tissue
1
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
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