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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
DNase-seq
75
ATAC-seq
42
ChIP-seq
6
snATAC-seq
4
RRBS
1
FAIRE-seq
1
Hi-C
Assay category
162
DNA accessibility
Transcription
42
DNA binding
4
DNA methylation
1
3D chromatin structure
Target of assay
30
histone
30
histone modification
15
broad histone mark
15
narrow histone mark
9
control
3
RNA binding protein
3
transcription factor
Date released
81
June, 2019
71
August, 2021
23
April, 2019
13
October, 2019
11
May, 2023
5
July, 2019
5
May, 2019
Available data
175
bed narrowPeak
121
bam
111
bigWig
103
bigBed narrowPeak
78
bed bed3+
78
bed broadPeak
78
bigBed broadPeak
64
xls
tsv
4
bed bedMethyl
4
bigBed bedMethyl
1
hic
Organism
209
Homo sapiens
Biosample type
179
tissue
30
primary cell
cell line
Organ
400
pancreas
271
epithelium
260
brain
210
heart
210
liver
209
kidney
201
connective tissue
154
vasculature
148
blood vessel
115
limb
97
bone element
89
adipose tissue
86
musculature of body
69
artery
42
eye
38
nerve
24
spleen
23
embryo
22
vein
18
ureter
12
skeleton
10
lung
8
blood
8
bodily fluid
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
209
AMP
Genome assembly (visualization)
185
GRCh38
109
hg19
Lab
127
AMP-T2D consortium
82
Katalin Susztak, Upenn
Audit category:
8
inconsistent ontology term
files.file_type!
tsv
biosample_type!
cell line
assay_slims!
Transcription
BIOSAMPLE
ASSAY
209 results
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DNase-seq
ATAC-seq
ChIP-seq
snATAC-seq
RRBS
FAIRE-seq
Hi-C
tissue
kidney
13
75
27
6
1
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 4 more…
primary cell
epithelial cell of proximal tubule
1
10
1
kidney epithelial cell
1
5
1
kidney tubule cell
3
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
+ See 3 more…
See all biosamples
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