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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
103
ATAC-seq
84
DNase-seq
47
ChIP-seq
6
snATAC-seq
5
RRBS
4
pCHi-C
1
FAIRE-seq
1
Hi-C
Assay category
194
DNA accessibility
Transcription
47
DNA binding
5
DNA methylation
1
3D chromatin structure
Target of assay
33
histone
33
histone modification
18
narrow histone mark
15
broad histone mark
10
control
4
RNA binding protein
4
transcription factor
Date released
88
June, 2019
71
August, 2021
27
February, 2023
23
April, 2019
20
October, 2019
11
May, 2023
6
July, 2019
5
May, 2019
Available data
208
bed narrowPeak
128
bam
117
bigWig
109
bigBed narrowPeak
82
bed bed3+
82
bed broadPeak
82
bigBed broadPeak
64
xls
5
bed bedMethyl
5
bigBed bedMethyl
tsv
1
hic
Organism
251
Homo sapiens
Biosample type
216
tissue
35
primary cell
cell line
Organ
400
pancreas
271
epithelium
260
brain
210
heart
210
liver
209
kidney
201
connective tissue
154
vasculature
148
blood vessel
115
limb
97
bone element
89
adipose tissue
86
musculature of body
69
artery
42
eye
38
nerve
24
spleen
23
embryo
22
vein
18
ureter
12
skeleton
10
lung
8
blood
8
bodily fluid
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
251
AMP
Genome assembly (visualization)
191
GRCh38
143
hg19
Lab
169
AMP-T2D consortium
82
Katalin Susztak, Upenn
Audit category:
8
inconsistent ontology term
files.file_type!
tsv
biosample_type!
cell line
assay_slims!
Transcription
BIOSAMPLE
ASSAY
251 results
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ATAC-seq
DNase-seq
ChIP-seq
snATAC-seq
RRBS
pCHi-C
FAIRE-seq
Hi-C
tissue
kidney
75
13
27
6
1
1
1
retina
15
3
pigmented layer of retina
12
renal cortex interstitium
11
renal pelvis
10
+ See 7 more…
primary cell
epithelial cell of proximal tubule
1
10
1
kidney epithelial cell
1
5
1
retinal pigment epithelial cell
1
3
1
kidney tubule cell
3
glomerular visceral epithelial cell
2
+ See 4 more…
See all biosamples
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