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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
DNase-seq
75
ATAC-seq
59
single cell RNA-seq
49
total RNA-seq
42
ChIP-seq
6
snATAC-seq
4
RRBS
1
FAIRE-seq
1
Hi-C
Assay category
162
DNA accessibility
108
Transcription
42
DNA binding
4
DNA methylation
1
3D chromatin structure
Target of assay
30
histone
30
histone modification
15
broad histone mark
15
narrow histone mark
9
control
3
RNA binding protein
3
transcription factor
Date released
128
August, 2021
81
June, 2019
47
September, 2023
23
April, 2019
14
May, 2023
13
October, 2019
5
July, 2019
5
May, 2019
1
December, 2019
Available data
175
bed narrowPeak
129
bam
119
bigWig
103
bigBed narrowPeak
78
bed bed3+
78
bed broadPeak
78
bigBed broadPeak
64
xls
62
txt
tsv
5
csv
4
bed bedMethyl
4
bigBed bedMethyl
1
hic
Organism
317
Homo sapiens
Biosample type
287
tissue
30
primary cell
cell line
Organ
471
pancreas
324
epithelium
317
kidney
260
brain
231
liver
211
heart
206
connective tissue
154
vasculature
148
blood vessel
115
limb
101
bone element
90
adipose tissue
87
musculature of body
69
artery
56
eye
38
nerve
23
embryo
22
vein
19
lung
18
ureter
17
spleen
16
skeleton
8
blood
8
bodily fluid
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
270
AMP
47
KPMP
Genome assembly (visualization)
185
GRCh38
109
hg19
Lab
142
Katalin Susztak, Upenn
128
AMP-T2D consortium
47
KPMP
Audit category:
8
inconsistent ontology term
files.file_type!
tsv
biosample_type!
cell line
month_released!
December, 2018
BIOSAMPLE
ASSAY
317 results
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DNase-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
RRBS
FAIRE-seq
Hi-C
tissue
kidney
13
75
59
49
27
6
1
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 4 more…
primary cell
epithelial cell of proximal tubule
1
10
1
kidney epithelial cell
1
5
1
kidney tubule cell
3
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
+ See 3 more…
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