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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1189
ChIP-seq
370
ATAC-seq
209
DNase-seq
177
total RNA-seq
124
single cell RNA-seq
85
RNA microarray
62
snATAC-seq
27
WGBS
26
Hi-C
22
pCHi-C
21
RRBS
5
FAIRE-seq
4
MeRIP-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
Assay category
1189
DNA binding
646
DNA accessibility
303
Transcription
49
DNA methylation
26
3D chromatin structure
Target of assay
867
histone modification
866
histone
440
narrow histone mark
426
broad histone mark
220
control
104
transcription factor
38
RNA binding protein
3
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
266
October, 2019
254
August, 2017
218
June, 2019
May, 2022
167
February, 2023
156
May, 2021
152
May, 2020
134
August, 2021
134
February, 2021
120
May, 2019
91
November, 2017
80
April, 2019
74
October, 2018
59
September, 2020
51
December, 2017
47
September, 2018
47
September, 2023
43
July, 2019
40
May, 2024
27
November, 2018
23
October, 2017
21
November, 2019
19
April, 2020
16
January, 2021
15
May, 2023
13
March, 2020
11
September, 2017
7
August, 2020
7
December, 2018
7
January, 2019
6
November, 2020
5
March, 2019
4
July, 2018
3
January, 2018
3
March, 2023
3
October, 2022
1
August, 2022
1
December, 2019
Available data
2495
bam
2368
bigWig
tsv
1243
bed narrowPeak
766
fastq
670
bigBed narrowPeak
338
tagAlign
262
bed broadPeak
244
bed bed3+
225
bigBed broadPeak
150
txt
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
19
zippedFastqFolder
17
hic
14
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
3
cool
1
bedpe
1
tagAlign bed3+
1
tar
Organism
2314
Homo sapiens
Biosample type
1635
tissue
684
primary cell
cell line
in vitro differentiated cells
6
stem cell
Organ
364
pancreas
317
kidney
260
brain
222
epithelium
211
heart
176
liver
154
vasculature
148
blood vessel
115
limb
114
connective tissue
101
bone element
89
adipose tissue
85
musculature of body
69
artery
56
eye
38
nerve
24
spleen
22
vein
19
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
1933
AMP
184
HPAP
139
T1D
47
KPMP
19
LungMap
2
community
1
ITG
Genome assembly (visualization)
1229
GRCh38
1177
hg19
1
hg18
Lab
1708
AMP-T2D consortium
184
Klaus Kaestner, Upenn
171
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
125
inconsistent ontology term
32
audit script error
27
inconsistent control
Audit category:
70
missing controlled_by
Audit category:
13
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
files.file_type!
tsv
biosample_type!
cell line
in vitro differentiated cells
month_released!
May, 2022
BIOSAMPLE
ASSAY
2325 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
Hi-C
pCHi-C
RRBS
FAIRE-seq
MeRIP-seq
CRISPR RNA-seq
CRISPRi RNA-seq
DNAme array
GRO-seq
tissue
kidney
27
75
13
49
59
6
1
1
1
islet of Langerhans
71
49
1
25
7
3
4
1
1
4
liver
145
2
1
3
1
1
bone element
84
heart left ventricle
35
2
3
4
1
1
+ See 145 more…
primary cell
monocyte
85
15
1
1
1
Langerhans cell
52
27
pancreatic alpha cell
13
13
42
1
exocrine cell
39
CD8-positive, alpha-beta T cell
33
2
2
1
+ See 69 more…
stem cell
hESC
3
1
SB Ad3.1
1
1
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