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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ATAC-seq
49
total RNA-seq
25
ChIP-seq
8
single cell RNA-seq
6
snATAC-seq
5
Hi-C
2
Capture-C
1
RNA microarray
Assay category
82
DNA accessibility
57
Transcription
25
DNA binding
5
3D chromatin structure
Target of assay
17
histone
17
histone modification
9
narrow histone mark
8
broad histone mark
8
control
Date released
322
August, 2017
272
October, 2019
218
June, 2019
209
May, 2021
200
May, 2022
183
February, 2023
169
August, 2021
152
May, 2020
138
February, 2021
120
May, 2019
94
December, 2017
91
November, 2017
80
April, 2019
74
October, 2018
59
September, 2020
47
September, 2018
47
September, 2023
43
July, 2019
40
May, 2024
27
November, 2018
26
November, 2019
24
February, 2018
23
October, 2017
19
April, 2020
17
March, 2020
16
January, 2021
15
May, 2023
11
September, 2017
7
August, 2020
7
December, 2018
7
January, 2018
7
January, 2019
6
November, 2020
5
March, 2019
4
July, 2018
3
March, 2023
3
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
Available data
tsv
92
bed narrowPeak
64
xls
57
txt
41
bam
25
bigWig
24
tagAlign
5
bed bed3+
4
bedpe bed3+
4
hic
3
cool
Organism
171
Homo sapiens
Biosample type
130
tissue
35
in vitro differentiated cells
cell line
7
primary cell
Organ
128
kidney
7
epithelium
5
connective tissue
4
liver
4
pancreas
1
adipose tissue
Project
169
AMP
3
HPAP
Genome assembly (visualization)
90
GRCh38
33
hg19
Lab
128
Katalin Susztak, Upenn
36
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
3
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
Audit category:
3
audit script error
files.file_type!
tsv
biosample_type!
cell line
BIOSAMPLE
ASSAY
172 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
Hi-C
Capture-C
RNA microarray
tissue
kidney
64
49
8
6
1
islet of Langerhans
1
subcutaneous adipose tissue
1
in vitro differentiated cells
neural progenitor cell
10
21
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
4
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
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