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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
3
Hi-C
Assay category
24
DNA binding
3
3D chromatin structure
Target of assay
16
histone
16
histone modification
8
broad histone mark
8
control
8
narrow histone mark
Date released
322
August, 2017
272
October, 2019
218
June, 2019
209
May, 2021
200
May, 2022
183
February, 2023
169
August, 2021
152
May, 2020
138
February, 2021
120
May, 2019
94
December, 2017
91
November, 2017
80
April, 2019
74
October, 2018
59
September, 2020
47
September, 2018
47
September, 2023
43
July, 2019
40
May, 2024
27
November, 2018
26
November, 2019
24
February, 2018
23
October, 2017
19
April, 2020
17
March, 2020
16
January, 2021
15
May, 2023
11
September, 2017
7
August, 2020
7
December, 2018
7
January, 2018
7
January, 2019
6
November, 2020
5
March, 2019
4
July, 2018
3
March, 2023
3
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
Available data
39
bam
39
fastq
31
bigWig
16
bed narrowPeak
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
27
Homo sapiens
Biosample type
24
in vitro differentiated cells
3
primary cell
cell line
Organ
9
embryo
3
epithelium
3
pancreas
Project
24
AMP
3
HPAP
Genome assembly (visualization)
19
hg19
16
GRCh38
Lab
24
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
3
audit script error
Audit category:
2
inconsistent control read length
files.file_type!
tsv
biosample_type!
cell line
BIOSAMPLE
ASSAY
27 results
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Clear Filters
ChIP-seq
Hi-C
in vitro differentiated cells
pancreatic endoderm
9
definitive endodermal cell
3
embryonic stem cell
3
endocrine cell
3
posterior foregut
3
+ See 1 more…
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
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