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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
132
ATAC-seq
71
total RNA-seq
58
ChIP-seq
45
WGBS
11
snATAC-seq
7
DNase-seq
7
Hi-C
4
MeRIP-seq
2
FAIRE-seq
2
RRBS
Assay category
152
DNA accessibility
71
Transcription
58
DNA binding
47
DNA methylation
7
3D chromatin structure
Target of assay
histone
132
histone modification
68
broad histone mark
64
narrow histone mark
42
control
18
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
104
May, 2022
55
February, 2023
33
August, 2017
21
October, 2018
20
November, 2019
19
September, 2020
14
September, 2018
11
September, 2017
8
January, 2021
7
August, 2020
7
November, 2018
5
March, 2019
5
October, 2017
4
July, 2018
4
June, 2019
4
March, 2020
4
November, 2020
3
May, 2021
3
October, 2019
3
October, 2022
2
July, 2019
1
August, 2021
1
August, 2022
1
May, 2019
Available data
508
bam
443
bigWig
tsv
371
fastq
84
bed narrowPeak
80
zippedFastqFolder
41
bigBed narrowPeak
15
bed bed3+
8
bed broadPeak
6
bed bedMethyl
6
bedpe bed3+
6
bigBed bedMethyl
6
bigBed broadPeak
6
hic
6
txt
4
tagAlign
3
cool
1
bedpe
Organism
338
Homo sapiens
Biosample type
180
primary cell
157
tissue
cell line
2
in vitro differentiated cells
Organ
339
pancreas
287
kidney
243
epithelium
147
liver
128
connective tissue
114
heart
101
bone element
83
vasculature
78
blood vessel
73
brain
66
limb
58
adipose tissue
54
musculature of body
53
eye
49
artery
19
lung
18
spleen
18
ureter
16
skeleton
14
nerve
11
embryo
8
blood
8
bodily fluid
7
vein
1
bone marrow
1
pericardium
1
pituitary gland
1
skin of body
1
thymus
Project
165
AMP
146
HPAP
28
T1D
Genome assembly (visualization)
102
hg19
89
GRCh38
Lab
146
Klaus Kaestner, Upenn
131
AMP-T2D consortium
51
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
4
audit script error
Audit category:
6
missing controlled_by
files.file_type!
tsv
biosample_type!
cell line
target.investigated_as!
histone
BIOSAMPLE
ASSAY
339 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
WGBS
snATAC-seq
DNase-seq
Hi-C
MeRIP-seq
FAIRE-seq
RRBS
primary cell
pancreatic alpha cell
35
42
6
25
1
pancreatic beta cell
23
11
6
16
1
pancreatic acinar cell
9
1
pancreatic ductal cell
4
tissue
islet of Langerhans
57
17
20
7
1
3
4
1
1
body of pancreas
4
18
2
4
pancreas
1
4
2
4
2
1
1
1
endocrine pancreas
2
in vitro differentiated cells
pancreatic PP cell
2
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