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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ATAC-seq
49
total RNA-seq
39
ChIP-seq
8
single cell RNA-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
82
DNA accessibility
57
Transcription
39
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
17
histone
17
histone modification
11
control
11
transcription factor
9
narrow histone mark
8
broad histone mark
1
RNA binding protein
Date released
397
November, 2017
266
October, 2019
263
August, 2017
192
August, 2021
163
June, 2019
115
February, 2021
115
May, 2019
113
February, 2023
94
December, 2017
87
November, 2018
80
April, 2019
74
October, 2018
72
May, 2021
66
May, 2022
50
May, 2020
47
September, 2023
41
November, 2019
35
December, 2018
30
July, 2019
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
18
March, 2020
15
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
September, 2017
5
March, 2019
4
July, 2018
4
March, 2023
1
August, 2018
1
August, 2022
1
December, 2019
1
October, 2022
Available data
tsv
103
bed narrowPeak
64
xls
57
txt
45
bam
44
bigWig
20
tagAlign
2
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
191
Homo sapiens
Biosample type
130
tissue
35
in vitro differentiated cells
27
cell line
primary cell
Organ
130
kidney
22
liver
5
connective tissue
3
pancreas
2
epithelium
1
adipose tissue
Project
192
AMP
Genome assembly (visualization)
87
GRCh38
42
hg19
Lab
128
Katalin Susztak, Upenn
34
AMP-T2D consortium
26
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
files.file_type!
tsv
biosample_type!
primary cell
BIOSAMPLE
ASSAY
192 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
64
49
8
6
1
islet of Langerhans
1
subcutaneous adipose tissue
1
in vitro differentiated cells
neural progenitor cell
10
21
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
18
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
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