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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
378
ChIP-seq
2
Hi-C
2
STARR-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
whole genome sequencing assay
Assay category
378
DNA binding
2
3D chromatin structure
1
DNA accessibility
1
DNA methylation
1
DNA sequencing
Target of assay
297
transcription factor
82
recombinant protein
60
control
54
RNA binding protein
20
chromatin remodeller
18
histone
18
histone modification
9
broad histone mark
9
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
46
November, 2018
22
August, 2021
2
February, 2021
1
December, 2018
Available data
367
fastq
366
bam
332
bigWig
308
bed narrowPeak
293
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
tsv
12
tagAlign
3
tar
1
bed bed3
1
bed bed3+
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
1
vcf
Organism
386
Homo sapiens
Biosample type
386
cell line
207
tissue
15
in vitro differentiated cells
9
primary cell
Organ
386
liver
61
blood
61
bodily fluid
58
pancreas
44
epithelium
14
artery
14
blood vessel
14
heart
14
vasculature
13
kidney
Project
386
AMP
Genome assembly (visualization)
325
hg19
263
GRCh38
Lab
364
AMP-T2D consortium
22
Bing Ren, UCSD
Audit category:
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
files.file_type!
tsv
BIOSAMPLE
ASSAY
386 results
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ChIP-seq
Hi-C
STARR-seq
ATAC-seq
WGBS
pCHi-C
whole genome sequencing assay
cell line
HepG2
378
2
2
1
1
1
1
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