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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
ChIP-seq
25
ATAC-seq
5
total RNA-seq
4
GRO-seq
4
Hi-C
2
pCHi-C
Assay category
131
DNA binding
25
DNA accessibility
5
Transcription
4
3D chromatin structure
Target of assay
75
histone
75
histone modification
39
narrow histone mark
36
broad histone mark
29
control
27
transcription factor
7
RNA binding protein
1
chromatin remodeller
Date released
53
May, 2021
43
December, 2017
31
August, 2021
24
February, 2018
5
November, 2019
4
January, 2018
4
March, 2020
4
October, 2019
3
February, 2023
Available data
232
bam
202
bigWig
tsv
87
bed narrowPeak
86
fastq
26
tagAlign
14
bigBed narrowPeak
12
bed bed3+
6
bedpe bed3+
4
hic
3
bed bedgraph
3
txt
2
ibed
Organism
171
Homo sapiens
Biosample type
1571
tissue
794
primary cell
543
cell line
171
in vitro differentiated cells
6
stem cell
Organ
connective tissue
23
embryo
22
epithelium
15
liver
3
pancreas
1
adipose tissue
Project
171
AMP
Genome assembly (visualization)
102
hg19
89
GRCh38
4
hg18
Lab
121
AMP-T2D consortium
47
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
21
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
files.file_type!
tsv
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
171 results
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ChIP-seq
ATAC-seq
total RNA-seq
GRO-seq
Hi-C
pCHi-C
in vitro differentiated cells
embryonic stem cell
40
6
5
neural progenitor cell
21
10
pancreatic endoderm
18
1
hepatocyte
15
definitive endodermal cell
8
1
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