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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
149
ChIP-seq
42
ATAC-seq
9
total RNA-seq
4
GRO-seq
4
Hi-C
3
pCHi-C
2
Capture-C
1
DNase-seq
Assay category
149
DNA binding
43
DNA accessibility
9
Transcription
4
3D chromatin structure
Target of assay
112
histone
112
histone modification
56
broad histone mark
55
narrow histone mark
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
46
August, 2017
37
May, 2021
35
August, 2021
32
December, 2017
24
February, 2018
16
February, 2023
6
October, 2019
5
November, 2019
4
February, 2021
4
January, 2018
4
March, 2020
1
August, 2018
Available data
254
bam
222
bigWig
tsv
108
fastq
100
bed narrowPeak
36
tagAlign
19
bed bed3+
15
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
214
Homo sapiens
Biosample type
1572
tissue
808
primary cell
214
in vitro differentiated cells
182
cell line
6
stem cell
Organ
70
connective tissue
20
embryo
19
epithelium
13
liver
2
pancreas
1
adipose tissue
Project
214
AMP
Genome assembly (visualization)
133
hg19
101
GRCh38
4
hg18
Lab
172
AMP-T2D consortium
35
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
22
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
7
inconsistent control read length
files.file_type!
tsv
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
214 results
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ChIP-seq
ATAC-seq
total RNA-seq
GRO-seq
Hi-C
pCHi-C
Capture-C
DNase-seq
in vitro differentiated cells
adipocyte
45
8
1
1
1
embryonic stem cell
28
6
5
neural progenitor cell
21
10
pancreatic endoderm
15
1
hepatocyte
13
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