Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
276
ChIP-seq
188
ATAC-seq
95
total RNA-seq
87
single cell RNA-seq
56
snATAC-seq
41
WGBS
16
pCHi-C
10
RRBS
6
Hi-C
4
DNase-seq
1
DNAme array
1
FAIRE-seq
Assay category
276
DNA binding
249
DNA accessibility
182
Transcription
52
DNA methylation
6
3D chromatin structure
Target of assay
234
histone
234
histone modification
121
broad histone mark
113
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
152
May, 2021
134
May, 2022
102
May, 2020
76
February, 2023
59
August, 2017
59
September, 2020
47
September, 2018
40
February, 2021
31
June, 2019
30
October, 2019
9
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
May, 2019
5
September, 2017
3
October, 2022
1
August, 2021
1
March, 2020
1
March, 2023
1
November, 2018
1
November, 2020
Available data
613
bigWig
609
bam
409
fastq
295
bed narrowPeak
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
781
Homo sapiens
Biosample type
1456
tissue
781
primary cell
540
cell line
238
in vitro differentiated cells
3
stem cell
Organ
269
epithelium
238
pancreas
27
vasculature
23
blood vessel
20
kidney
20
vein
16
connective tissue
11
musculature of body
10
brain
8
blood
8
bodily fluid
6
heart
4
eye
3
liver
1
bone element
1
bone marrow
Project
354
AMP
318
HPAP
108
T1D
1
ITG
Genome assembly (visualization)
346
hg19
254
GRCh38
Lab
321
AMP-T2D consortium
318
Klaus Kaestner, Upenn
141
Kyle Gaulton, UCSD
1
ITG
Audit category:
34
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
files.file_type!
tsv
bed bed3+
BIOSAMPLE
ASSAY
781 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
RRBS
Hi-C
DNase-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
13
35
42
25
1
monocyte
85
15
1
1
1
pancreatic beta cell
13
23
11
16
1
exocrine cell
39
+ See 61 more…
See all biosamples
Download