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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
222
ChIP-seq
166
ATAC-seq
97
total RNA-seq
87
single cell RNA-seq
56
snATAC-seq
41
WGBS
17
pCHi-C
10
Hi-C
10
RRBS
2
DNase-seq
1
DNAme array
Assay category
224
DNA accessibility
222
DNA binding
184
Transcription
52
DNA methylation
10
3D chromatin structure
Target of assay
190
histone
190
histone modification
101
broad histone mark
89
narrow histone mark
32
control
Date released
154
May, 2021
134
May, 2022
102
May, 2020
76
February, 2023
59
September, 2020
41
February, 2021
40
August, 2017
33
September, 2018
19
October, 2019
13
July, 2019
8
January, 2021
8
June, 2019
7
August, 2020
4
August, 2021
3
November, 2017
3
October, 2022
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2018
1
November, 2020
Available data
613
bigWig
609
bam
409
fastq
295
bed narrowPeak
tsv
153
zippedFastqFolder
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
709
Homo sapiens
Biosample type
1100
tissue
709
primary cell
246
in vitro differentiated cells
188
cell line
6
stem cell
Organ
229
epithelium
216
pancreas
14
kidney
14
vasculature
12
blood vessel
9
connective tissue
9
vein
8
blood
8
bodily fluid
7
brain
7
liver
3
heart
3
musculature of body
2
eye
1
bone element
1
bone marrow
Project
318
HPAP
282
AMP
108
T1D
1
ITG
Genome assembly (visualization)
274
hg19
179
GRCh38
Lab
318
Klaus Kaestner, Upenn
247
AMP-T2D consortium
143
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
14
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
files.file_type!
tsv
bigBed narrowPeak
BIOSAMPLE
ASSAY
709 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
DNAme array
primary cell
Langerhans cell
85
48
pancreatic alpha cell
13
29
42
25
1
monocyte
85
15
1
1
1
pancreatic beta cell
13
16
11
16
1
exocrine cell
39
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